SeqAn3 3.4.0-rc.1
The Modern C++ library for sequence analysis.
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The basis for seqan3::alphabet, but requires only rank interface (not char). More...
#include <seqan3/alphabet/concept.hpp>
Related Symbols | |
(Note that these are not member symbols.) | |
Generic serialisation functions for all seqan3::semialphabet | |
All types that satisfy seqan3::semialphabet can be serialised via Cereal. | |
template<cereal_output_archive archive_t, semialphabet alphabet_t> | |
alphabet_rank_t< alphabet_t > | save_minimal (archive_t const &, alphabet_t const &l) |
Save an alphabet letter to stream. | |
template<cereal_input_archive archive_t, typename wrapped_alphabet_t > | |
void | load_minimal (archive_t const &, wrapped_alphabet_t &&l, alphabet_rank_t< detail::strip_cereal_wrapper_t< wrapped_alphabet_t > > const &r) |
Restore an alphabet letter from a saved rank. | |
The basis for seqan3::alphabet, but requires only rank interface (not char).
This concept represents the "rank part" of what is considered "an alphabet" in SeqAn. It requires no char
representation and corresponding interfaces. It is mostly used internally.
t
shall model std::totally_ordered ("has all comparison operators")t
shall be efficiently copyable:t
shall model std::copy_constructible and be std::is_nothrow_copy_constructiblet
t
See the documentation pages for the respective requirements. The implications of 2. are that you can always take function arguments of types that model seqan3::semialphabet by value.
It is highly recommended that non-reference types that model this concept, also model:
All alphabets available in SeqAn (with very few exceptions) do so.
If a given type t
models this concept, the following types typically do so, as well:
t &
t const
t const &
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related |
Restore an alphabet letter from a saved rank.
archive_t | Must satisfy seqan3::cereal_input_archive. |
wrapped_alphabet_t | A seqan3::semialphabet after Cereal mangles it up. |
l | The alphabet letter (cereal wrapped). |
r | The assigned value. |
Delegates to seqan3::assign_rank.
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related |
Save an alphabet letter to stream.
archive_t | Must satisfy seqan3::cereal_output_archive. |
alphabet_t | Type of l; must satisfy seqan3::semialphabet. |
l | The alphabet letter. |
Delegates to seqan3::to_rank.