68 constexpr dna4() noexcept = default;
69 constexpr
dna4(
dna4 const &) noexcept = default;
71 constexpr
dna4 & operator=(
dna4 const &) noexcept = default;
72 constexpr
dna4 & operator=(
dna4 &&) noexcept = default;
73 ~
dna4() noexcept = default;
85 constexpr
dna4(t const & r) noexcept
218inline namespace literals
240constexpr dna4 operator""_dna4(
char const c)
noexcept
260 for (
size_t i = 0; i < n; ++i)
261 r[i].assign_char(s[i]);
constexpr derived_type & assign_char(char_type const chr) noexcept
Assign from a character, implicitly converts invalid characters.
Definition alphabet_base.hpp:160
static constexpr detail::min_viable_uint_t< size > alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition alphabet_base.hpp:196
constexpr derived_type & assign_rank(rank_type const c) noexcept
Assign from a numeric value.
Definition alphabet_base.hpp:184
rank_type rank
The value of the alphabet letter is stored as the rank.
Definition alphabet_base.hpp:258
The four letter DNA alphabet of A,C,G,T.
Definition dna4.hpp:50
constexpr dna4 complement() const noexcept
Returns the complement of the current nucleotide.
Definition dna4.hpp:92
constexpr dna4() noexcept=default
Defaulted.
static constexpr std::array< rank_type, 256 > char_to_rank_table
The lookup table used in char_to_rank.
Definition dna4.hpp:164
friend rna4
Befriend seqan3::rna4 so it can copy char_to_rank.
Definition dna4.hpp:62
static constexpr char_type rank_to_char(rank_type const rank)
Returns the character representation of rank.
Definition dna4.hpp:144
static constexpr rank_type rank_complement_table[alphabet_size]
The rank complement table.
Definition dna4.hpp:124
friend base_t
Befriend seqan3::nucleotide_base.
Definition dna4.hpp:56
static constexpr rank_type char_to_rank(char_type const chr)
Returns the rank representation of character.
Definition dna4.hpp:153
static constexpr char_type rank_to_char_table[alphabet_size]
The lookup table used in rank_to_char.
Definition dna4.hpp:121
static constexpr rank_type rank_complement(rank_type const rank)
Returns the complement by rank.
Definition dna4.hpp:135
A CRTP-base that refines seqan3::alphabet_base and is used by the nucleotides.
Definition nucleotide_base.hpp:40
alphabet_base< dna4, size, char > base_t
Type of the base class.
Definition nucleotide_base.hpp:43
The four letter RNA alphabet of A,C,G,U.
Definition rna4.hpp:46
constexpr auto to_rank
Return the rank representation of a (semi-)alphabet object.
Definition alphabet/concept.hpp:152
The main SeqAn3 namespace.
Definition aligned_sequence_concept.hpp:26
constexpr char_type to_lower(char_type const c) noexcept
Converts 'A'-'Z' to 'a'-'z' respectively; other characters are returned as is.
Definition transform.hpp:80
SeqAn specific customisations in the standard namespace.
Provides seqan3::nucleotide_base.